Soybean knowledge base (SoyKB): a web resource for integration of soybean translational genomics and molecular breeding
Identifieur interne : 000288 ( Main/Exploration ); précédent : 000287; suivant : 000289Soybean knowledge base (SoyKB): a web resource for integration of soybean translational genomics and molecular breeding
Auteurs : Trupti Joshi [États-Unis] ; Michael R. Fitzpatrick [États-Unis] ; Shiyuan Chen [États-Unis] ; Yang Liu [États-Unis] ; Hongxin Zhang [États-Unis] ; Ryan Z. Endacott [États-Unis] ; Eric C. Gaudiello [États-Unis] ; Gary Stacey [États-Unis] ; Henry T. Nguyen [États-Unis] ; Dong Xu [États-Unis]Source :
- Nucleic Acids Research [ 0305-1048 ] ; 2013.
Abstract
Soybean Knowledge Base (
Url:
DOI: 10.1093/nar/gkt905
PubMed: 24136998
PubMed Central: 3965117
Affiliations:
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: 000065
- to stream Pmc, to step Curation: 000065
- to stream Pmc, to step Checkpoint: 000266
- to stream Ncbi, to step Merge: 000463
- to stream Ncbi, to step Curation: 000463
- to stream Ncbi, to step Checkpoint: 000463
- to stream Main, to step Merge: 000288
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Le document en format XML
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Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA,</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Christopher S. 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Fitzpatrick</name><affiliation wicri:level="2"><nlm:aff id="gkt905-AFF1">Department of Computer Science, University of Missouri, Columbia, MO 65211, USA,</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Computer Science, University of Missouri, Columbia, MO 65211</wicri:regionArea><placeName><region type="state">Missouri (État)</region></placeName></affiliation><affiliation wicri:level="2"><nlm:aff id="gkt905-AFF1">Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA,</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211</wicri:regionArea><placeName><region type="state">Missouri (État)</region></placeName></affiliation></author><author><name sortKey="Chen, Shiyuan" sort="Chen, Shiyuan" uniqKey="Chen S" first="Shiyuan" last="Chen">Shiyuan Chen</name><affiliation wicri:level="2"><nlm:aff id="gkt905-AFF1">Department of Computer Science, University of Missouri, Columbia, MO 65211, USA,</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Computer Science, University of Missouri, Columbia, MO 65211</wicri:regionArea><placeName><region type="state">Missouri (État)</region></placeName></affiliation><affiliation wicri:level="2"><nlm:aff id="gkt905-AFF1">Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA,</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211</wicri:regionArea><placeName><region type="state">Missouri (État)</region></placeName></affiliation></author><author><name sortKey="Liu, Yang" sort="Liu, Yang" uniqKey="Liu Y" first="Yang" last="Liu">Yang Liu</name><affiliation wicri:level="2"><nlm:aff id="gkt905-AFF1">Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA,</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Christopher S. 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Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA,</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211</wicri:regionArea><placeName><region type="state">Missouri (État)</region></placeName></affiliation></author><author><name sortKey="Endacott, Ryan Z" sort="Endacott, Ryan Z" uniqKey="Endacott R" first="Ryan Z." last="Endacott">Ryan Z. Endacott</name><affiliation wicri:level="2"><nlm:aff id="gkt905-AFF1">Department of Computer Science, University of Missouri, Columbia, MO 65211, USA,</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Computer Science, University of Missouri, Columbia, MO 65211</wicri:regionArea><placeName><region type="state">Missouri (État)</region></placeName></affiliation><affiliation wicri:level="2"><nlm:aff id="gkt905-AFF1">Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA,</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211</wicri:regionArea><placeName><region type="state">Missouri (État)</region></placeName></affiliation></author><author><name sortKey="Gaudiello, Eric C" sort="Gaudiello, Eric C" uniqKey="Gaudiello E" first="Eric C." last="Gaudiello">Eric C. Gaudiello</name><affiliation wicri:level="2"><nlm:aff id="gkt905-AFF1">Department of Computer Science, University of Missouri, Columbia, MO 65211, USA,</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Computer Science, University of Missouri, Columbia, MO 65211</wicri:regionArea><placeName><region type="state">Missouri (État)</region></placeName></affiliation><affiliation wicri:level="2"><nlm:aff id="gkt905-AFF1">Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA,</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211</wicri:regionArea><placeName><region type="state">Missouri (État)</region></placeName></affiliation></author><author><name sortKey="Stacey, Gary" sort="Stacey, Gary" uniqKey="Stacey G" first="Gary" last="Stacey">Gary Stacey</name><affiliation wicri:level="2"><nlm:aff id="gkt905-AFF1">Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA,</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211</wicri:regionArea><placeName><region type="state">Missouri (État)</region></placeName></affiliation><affiliation wicri:level="2"><nlm:aff id="gkt905-AFF1">National Center for Soybean Biotechnology, University of Missouri, Columbia, MO 65211, USA,</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>National Center for Soybean Biotechnology, University of Missouri, Columbia, MO 65211</wicri:regionArea><placeName><region type="state">Missouri (État)</region></placeName></affiliation><affiliation wicri:level="2"><nlm:aff id="gkt905-AFF1">Division of Plant Sciences, University of Missouri, Columbia, MO 65211, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Division of Plant Sciences, University of Missouri, Columbia, MO 65211</wicri:regionArea><placeName><region type="state">Missouri (État)</region></placeName></affiliation></author><author><name sortKey="Nguyen, Henry T" sort="Nguyen, Henry T" uniqKey="Nguyen H" first="Henry T." last="Nguyen">Henry T. 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Bond Life Sciences Center, University of Missouri, Columbia, MO 65211</wicri:regionArea><placeName><region type="state">Missouri (État)</region></placeName></affiliation><affiliation wicri:level="2"><nlm:aff id="gkt905-AFF1">National Center for Soybean Biotechnology, University of Missouri, Columbia, MO 65211, USA,</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>National Center for Soybean Biotechnology, University of Missouri, Columbia, MO 65211</wicri:regionArea><placeName><region type="state">Missouri (État)</region></placeName></affiliation><affiliation wicri:level="2"><nlm:aff id="gkt905-AFF1">Division of Plant Sciences, University of Missouri, Columbia, MO 65211, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Division of Plant Sciences, University of Missouri, Columbia, MO 65211</wicri:regionArea><placeName><region type="state">Missouri (État)</region></placeName></affiliation></author><author><name sortKey="Xu, Dong" sort="Xu, Dong" uniqKey="Xu D" first="Dong" last="Xu">Dong Xu</name><affiliation wicri:level="2"><nlm:aff id="gkt905-AFF1">Department of Computer Science, University of Missouri, Columbia, MO 65211, USA,</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Computer Science, University of Missouri, Columbia, MO 65211</wicri:regionArea><placeName><region type="state">Missouri (État)</region></placeName></affiliation><affiliation wicri:level="2"><nlm:aff id="gkt905-AFF1">Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA,</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211</wicri:regionArea><placeName><region type="state">Missouri (État)</region></placeName></affiliation><affiliation wicri:level="2"><nlm:aff id="gkt905-AFF1">National Center for Soybean Biotechnology, University of Missouri, Columbia, MO 65211, USA,</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>National Center for Soybean Biotechnology, University of Missouri, Columbia, MO 65211</wicri:regionArea><placeName><region type="state">Missouri (État)</region></placeName></affiliation><affiliation wicri:level="2"><nlm:aff wicri:cut=" and" id="gkt905-AFF1">Informatics Institute, University of Missouri, Columbia, MO 65211, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Informatics Institute, University of Missouri, Columbia, MO 65211</wicri:regionArea><placeName><region type="state">Missouri (État)</region></placeName></affiliation></author></analytic><series><title level="j">Nucleic Acids Research</title><idno type="ISSN">0305-1048</idno><idno type="eISSN">1362-4962</idno><imprint><date when="2013">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Soybean Knowledge Base (<ext-link ext-link-type="uri" xlink:href="http://soykb.org">http://soykb.org</ext-link>) is a comprehensive web resource developed for bridging soybean translational genomics and molecular breeding research. It provides information for six entities including genes/proteins, microRNAs/sRNAs, metabolites, single nucleotide polymorphisms, plant introduction lines and traits. It also incorporates many multi-omics datasets including transcriptomics, proteomics, metabolomics and molecular breeding data, such as quantitative trait loci, traits and germplasm information. Soybean Knowledge Base has a new suite of tools such as <italic>In Silico</italic> Breeding Program for soybean breeding, which includes a graphical chromosome visualizer for ease of navigation. It integrates quantitative trait loci, traits and germplasm information along with genomic variation data, such as single nucleotide polymorphisms, insertions, deletions and genome-wide association studies data, from multiple soybean cultivars and <italic>Glycine soja</italic>.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Schmutz, J" uniqKey="Schmutz J">J Schmutz</name></author><author><name sortKey="Cannon, Sb" uniqKey="Cannon S">SB Cannon</name></author><author><name sortKey="Schlueter, J" uniqKey="Schlueter J">J Schlueter</name></author><author><name sortKey="Ma, J" uniqKey="Ma J">J Ma</name></author><author><name sortKey="Mitros, T" uniqKey="Mitros T">T Mitros</name></author><author><name sortKey="Nelson, W" uniqKey="Nelson W">W Nelson</name></author><author><name sortKey="Hyten, Dl" uniqKey="Hyten D">DL Hyten</name></author><author><name sortKey="Song, Q" uniqKey="Song Q">Q Song</name></author><author><name 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uniqKey="Joshi T" first="Trupti" last="Joshi">Trupti Joshi</name></region><name sortKey="Chen, Shiyuan" sort="Chen, Shiyuan" uniqKey="Chen S" first="Shiyuan" last="Chen">Shiyuan Chen</name><name sortKey="Chen, Shiyuan" sort="Chen, Shiyuan" uniqKey="Chen S" first="Shiyuan" last="Chen">Shiyuan Chen</name><name sortKey="Endacott, Ryan Z" sort="Endacott, Ryan Z" uniqKey="Endacott R" first="Ryan Z." last="Endacott">Ryan Z. Endacott</name><name sortKey="Endacott, Ryan Z" sort="Endacott, Ryan Z" uniqKey="Endacott R" first="Ryan Z." last="Endacott">Ryan Z. Endacott</name><name sortKey="Fitzpatrick, Michael R" sort="Fitzpatrick, Michael R" uniqKey="Fitzpatrick M" first="Michael R." last="Fitzpatrick">Michael R. Fitzpatrick</name><name sortKey="Fitzpatrick, Michael R" sort="Fitzpatrick, Michael R" uniqKey="Fitzpatrick M" first="Michael R." last="Fitzpatrick">Michael R. Fitzpatrick</name><name sortKey="Gaudiello, Eric C" sort="Gaudiello, Eric C" uniqKey="Gaudiello E" first="Eric C." last="Gaudiello">Eric C. Gaudiello</name><name sortKey="Gaudiello, Eric C" sort="Gaudiello, Eric C" uniqKey="Gaudiello E" first="Eric C." last="Gaudiello">Eric C. Gaudiello</name><name sortKey="Joshi, Trupti" sort="Joshi, Trupti" uniqKey="Joshi T" first="Trupti" last="Joshi">Trupti Joshi</name><name sortKey="Joshi, Trupti" sort="Joshi, Trupti" uniqKey="Joshi T" first="Trupti" last="Joshi">Trupti Joshi</name><name sortKey="Joshi, Trupti" sort="Joshi, Trupti" uniqKey="Joshi T" first="Trupti" last="Joshi">Trupti Joshi</name><name sortKey="Liu, Yang" sort="Liu, Yang" uniqKey="Liu Y" first="Yang" last="Liu">Yang Liu</name><name sortKey="Liu, Yang" sort="Liu, Yang" uniqKey="Liu Y" first="Yang" last="Liu">Yang Liu</name><name sortKey="Nguyen, Henry T" sort="Nguyen, Henry T" uniqKey="Nguyen H" first="Henry T." last="Nguyen">Henry T. Nguyen</name><name sortKey="Nguyen, Henry T" sort="Nguyen, Henry T" uniqKey="Nguyen H" first="Henry T." last="Nguyen">Henry T. Nguyen</name><name sortKey="Nguyen, Henry T" sort="Nguyen, Henry T" uniqKey="Nguyen H" first="Henry T." last="Nguyen">Henry T. Nguyen</name><name sortKey="Stacey, Gary" sort="Stacey, Gary" uniqKey="Stacey G" first="Gary" last="Stacey">Gary Stacey</name><name sortKey="Stacey, Gary" sort="Stacey, Gary" uniqKey="Stacey G" first="Gary" last="Stacey">Gary Stacey</name><name sortKey="Stacey, Gary" sort="Stacey, Gary" uniqKey="Stacey G" first="Gary" last="Stacey">Gary Stacey</name><name sortKey="Xu, Dong" sort="Xu, Dong" uniqKey="Xu D" first="Dong" last="Xu">Dong Xu</name><name sortKey="Xu, Dong" sort="Xu, Dong" uniqKey="Xu D" first="Dong" last="Xu">Dong Xu</name><name sortKey="Xu, Dong" sort="Xu, Dong" uniqKey="Xu D" first="Dong" last="Xu">Dong Xu</name><name sortKey="Xu, Dong" sort="Xu, Dong" uniqKey="Xu D" first="Dong" last="Xu">Dong Xu</name><name sortKey="Zhang, Hongxin" sort="Zhang, Hongxin" uniqKey="Zhang H" first="Hongxin" last="Zhang">Hongxin Zhang</name><name sortKey="Zhang, Hongxin" sort="Zhang, Hongxin" uniqKey="Zhang H" first="Hongxin" last="Zhang">Hongxin Zhang</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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